Upload Options
General
Quickload [ Description ]
Batch upload [ Description ]
Flexload [ Description ]
Advanced Upload (RMA) [ Description ]

 
Step-by-step
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Pairwise Analysis

 
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Pairwise Results

 
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Create New Project

 
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Project Analysis

 
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Save as Project

 
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Gene Navigation

 
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Gene Clustering

 
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Gene Function

 
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Pattern Navigation

 
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Generate Project Analysis

 
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Save sub-Project

 
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Pairwise Analysis
  • Data Normalization
  • Log transform
  • Non/Parametric t-tests
  • Multiple correction testing
  • Data QC
Project Analysis
  • Data Normalization
  • Log transform
  • Non/Parametric t-tests
  • ANOVA
  • Multiple correction
  • Data QC






Quickload
Use the QuickLoad Wizard to load your data into GeneSifter.Net.
Supported platforms for this tool include:
  • Affymetrix® MAS 4, MAS 5 and GCOS
  • Pathways™ 2 & 4
  • Spot-On
  • Mergen arrays scanned with GenePix®
(all other GenePix files may be loaded using FlexLoad) Data Files may be archived (zipped) prior to upload.
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Batch Upload
Use Batch Upload to load multiple data sets stored in a spreadsheet as a tab-delimited text file.
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Flexload
Use the FlexLoad Wizard to load data in GeneSifter.Net if the array you are using is not included in the QuickLoad Wizard. Familiarity with the layout of your files is advised before going any further. You will be asked:
  • to provide information about the file structure, e.g. what column describes absolute intensity, background intensity, etc.
  • how you want the data transformed, e.g preserve channel intensities or express as a ratio of the two channels.
  • how you want the data normalized, e.g. LOWESS.
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Advanced Upload (RMA)
Robust multi-array average (RMA) is a method for deriving expression measurements from the probe level data contained in an Affymetrix .CEL file. GeneSifter.Net users have the option to perform RMA during the upload of .CEL files. The normalized data is saved in the user’s account for further analysis.
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